miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|240360988|gb|GR363065.1|GR363065 TGGACCTCGAAGTGCCCCTACAAGGACCTTGCTCCAGCACCAGATGCTCTTGACATGCCTCCTACTTCGGATGGACCTCC
AGCACTGGGTGGTGGTGGTGCTGCCAAGGGATCATATGTTCCTCCGAGGTTGAGGGCTGGCGCAGTGCAAGATGCTGGAC
ATGACATGAGGCGCAGGAACGATGAGAACTCTGTCCGTGTTACCAATCTATCAGAGGACACCCGTGAGCCTGATGTGCTT
GAGCTGTTCCGCACATTTGGGCCGGTCAGCCGTGTCTATGTTGCGGTGGATCAGAAGACTGGATCAAGCAGGGGCTTTGG
CTTCGTCAACTTTGTCCACAGGGAGGATGCTGAGAAGGCTATCAGCAAGCTCAATGGGTATGGTTATGATAACCTTATCC
TCCATGTGGAGTGGGCAACACCCAGGCCTAGTTAGCTTGTCGATTTCCCTTAAAGTGTTCTATCAGTGCGGACTTTGAAA
TACTAGTACTCCCTCCGATCCTAAATAAATGTCGCAGTTTTGAACTAACTCTATTTAGGATCAGAGGGAGTGGTATTTTT
GTGTTTATGAACTTGTGTTGTGTTTTGGCTGGTTGAGAATAACTATACTGTGCTGCTA




Most similar to sp|Q5RK09|EIF3G_RAT

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q5RK09|EIF3G_RAT Eukaryotic translation initiation factor 3
          Length = 320

 Score =  122 bits (305), Expect = 2e-27
 Identities = 61/106 (57%), Positives = 80/106 (75%), Gaps = 3/106 (2%)
 Frame = +1

Query: 115 YVPPRLRAGAVQDAGHDM---RRRNDENSVRVTNLSEDTREPDVLELFRTFGPVSRVYVA 285
           YVPP LR GA +  G  M   RR +D  ++RVTNLSEDTRE D+ ELFR FG +SR+Y+A
Sbjct: 213 YVPPSLRDGASR-RGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLA 271

Query: 286 VDQKTGSSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEWATP 423
            D+ TG S+GF F++F  REDA +AI+ ++G+GYD+LIL+VEWA P
Sbjct: 272 KDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 317